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Título: Structure-based design of a covalent Inhibitor of the SET domain-containing protein 8 (SETD8) lysine methyltransferase
Autor(es): Butler, Kyle V.
Anqi Ma
Wenyu Yu
Fengling Li
Tempel, Wolfram
Babault, Nicolas
Pittella-Silva, Fabio
Shao, Jason
Junyi Wang
Minkui Luo
Vedadi, Masoud
Brown, Peter J.
Arrowsmith, Cheryl H.
Jian Jin
Afiliação do autor: Department of Pharmacological Sciences and Department of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, New York 10029, Estados Unidos
Structural Genomics Consortium, Universidade de Toronto, Toronto, Ontário M5G 1L7, Canadá
Molecular Pharmacology and Chemistry Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, Estados Unidos
Department of Pharmacology and Toxicology, University of Toronto, Toronto, Ontário M5S 1A8, Canadá
Assunto: Adutos
Estrutura cristalina
Inibidores
Monômeros
Peptídeos
Proteínas
Data de publicação: 2016
Editora: American Chemical Society
Referência: BUTLER, Kyle V. et al. Structure-based design of a covalent Inhibitor of the SET domain-containing protein 8 (SETD8) lysine methyltransferase. Journal of Medicinal Chemistry, v. 59, 21, p. 9881–9889, 2016. DOI: https://doi.org/10.1021/acs.jmedchem.6b01244.
Abstract: Selective inhibitors of protein lysine methyltransferases, including SET domain-containing protein 8 (SETD8), are highly desired, as only a fraction of these enzymes are associated with high-quality inhibitors. From our previously discovered SETD8 inhibitor, we developed a more potent analog and solved a cocrystal structure, which is the first crystal structure of SETD8 in complex with a small-molecule inhibitor. This cocrystal structure allowed the design of a covalent inhibitor of SETD8 (MS453), which specifically modifies a cysteine residue near the inhibitor binding site, has an IC50 value of 804 nM, reacts with SETD8 with near-quantitative yield, and is selective for SETD8 against 28 other methyltransferases. We also solved the crystal structure of the covalent inhibitor in complex with SETD8. This work provides atomic-level perspective on the inhibition of SETD8 by small molecules and will help identify high-quality chemical probes of SETD8.
DOI: https://doi.org/10.1021/acs.jmedchem.6b01244
Versão da editora: https://pubs.acs.org/doi/10.1021/acs.jmedchem.6b01244#
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