Título:	Caracterização molecular de Johnsongrass mosaic virus em plantas forrageiras dos gêneros brachiaria, panicum e pennisetum
Autor(es):	Silva, Karina Nascimento da
Orientador(es):	Resende, Renato de Oliveira
Assunto:	Capim-braquiária Capim-gordura Plantas forrageiras Capim-elefante Vírus de plantas
Data de publicação:	28-Mai-2015
Data de defesa:	26-Fev-2015
Referência:	SILVA, Karina Nascimento da. Caracterização molecular de Johnsongrass mosaic virus em plantas forrageiras dos gêneros brachiaria, panicum e pennisetum. 2015. xvii, 94 f., il. Dissertação (Mestrado em Fitopatologia)—Universidade de Brasília, Brasília, 2015.
Abstract:	Currently, Brazil has the largest commercial herd in the world, totaling 210 million head of cattle, for the production of meat, milk and dairy products. This makes it the largest exporter in the world meat and the 2nd largest producer, accounting for 16% of this trade. Considering milk production, Brazil is ranked 3rd in the world market. This production occurs in 48% of areas occupied by rural activities, which are used natural and cultivated pastures. The main forage crops planted in Brazil are Panicum, Brachiaria and Pennisetum, all belonging to the Poaceae family whose center of origin and diversity is in Africa. Plants with symptoms of virus have often been found, mainly in germoplasm banks Embrapa Beef Cattle in Mato Grosso do Sul, and the Embrapa Dairy Cattle in the state of Bahia. Due to lack of knowledge of the etiologic agent, the present study aimed to identify and characterize viruses in forages of Panicum, Brachiaria and Pennisetum. Using high performance platform Illumina sequencing, was identified Johnsongrass mosaic virus. Initially, sequencing was carried out from a Pennisetum line. A second sequencing was done using 5 of Panicum and 5 of Brachiaria lines. Thus, two genomes were obtained from JGMV, one with 9828 nt in length, excluding the poly (A) tail, from Panicum and Brachiaria (JGMV-BR), and the other with a length of 9649 nt, excluding the poly (A) and the 5ˊUTR region, from Pennisetum (JGMV-Penni). The 5ˊRACE technique was used for isolation of the 5ˊUTR of JGMV-BR. The 3ˊUTR for each isolate was also amplified and sequenced. Analysis of the predicted amino acid sequence permitted the deduction of the cleavage sites and the sequences and identifying the conserved motifs within the sequence of each protein. The genome comparisons analysis of each virus revealed identity of the coat protein of 77% (nt) of JGMV-BR and 78% (nt) of JGMV-Penni with JGMV Australian (NC_003606). According to the demarcation criterion for Potyvirus, where the threshold for species differentiation is 76-77% nucleotide identity, the two JGMV are isolated from a strain of the same species. Phylogenetic trees generated using the nucleotide and peptide sequence of the polyprotein revealed that the two Brazilian isolates of JGMV are phylogenetically related to the Australian JGMV, and both are related to Canna yellow streak virus. In addition, several species that infect monocots formed a clade where JGMV groups. From the consensus sequence of the complete genome of JGMV-BR specific primers were synthesized which corresponded to the gene for the coat protein detection JGMV. Furthermore, to evaluate the genetic diversity of JGMV, from 11 lines used in NGS CP gene fragments were cloned and 3 to 5 clones were sequenced for each lines evaluated. The comparison of the nucleotide sequences of the matrix CP compared with the Australian and American isolates ranged 77-82% nucleotide identity. The phylogenetic tree using the nucleotide sequence of CP indicates the presence of at least two strains of JGMV, one circulating US / Australia and other in Brazil. Furthermore, it is possible to observe that some virus isolates were found in more than one line and certain line demonstrated the presence of more than one isolated. Thus, as a result of this work, we performed the first report of JGMV in Brazil.
Unidade Acadêmica:	Instituto de Ciências Biológicas (IB) Departamento de Fitopatologia (IB FIT)
Informações adicionais:	Dissertação (mestrado)—Universidade de Brasília, Instituto de Ciências Biológicas, Departamento de Fitopatologia, Programa de Pós-Graduação em Fitopatologia, 2015.
Programa de pós-graduação:	Programa de Pós-Graduação em Fitopatologia
Licença:	A concessão da licença deste item refere-se ao termo de autorização impresso assinado pelo autor com as seguintes condições: Na qualidade de titular dos direitos de autor da publicação, autorizo a Universidade de Brasília e o IBICT a disponibilizar por meio dos sites www.bce.unb.br, www.ibict.br, http://hercules.vtls.com/cgi-bin/ndltd/chameleon?lng=pt&skin=ndltd sem ressarcimento dos direitos autorais, de acordo com a Lei nº 9610/98, o texto integral da obra disponibilizada, conforme permissões assinaladas, para fins de leitura, impressão e/ou download, a título de divulgação da produção científica brasileira, a partir desta data.
DOI:	http://dx.doi.org/10.26512/2015.02.D.18300
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